{"servers":[{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.0.17.4","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.0.17.4","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-02-06T04:08:46.138499Z","publishedAt":"2026-02-06T04:08:46.138499Z","updatedAt":"2026-02-06T04:08:46.138499Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.0.17.5","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.0.17.5","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-02-06T04:14:39.599527Z","publishedAt":"2026-02-06T04:14:39.599527Z","updatedAt":"2026-02-06T04:14:39.599527Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.0.17.6","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.0.17.6","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-02-06T15:35:16.395666Z","publishedAt":"2026-02-06T15:35:16.395666Z","updatedAt":"2026-02-06T15:35:16.395666Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.0.17.7","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.0.17.7","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-02-06T22:47:58.8181Z","publishedAt":"2026-02-06T22:47:58.8181Z","updatedAt":"2026-02-06T22:47:58.8181Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.0.17.8","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.0.17.8","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-02-07T16:56:37.689967Z","publishedAt":"2026-02-07T16:56:37.689967Z","updatedAt":"2026-02-07T16:56:37.689967Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.0.17.9","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.0.17.9","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-02-08T03:59:51.889536Z","publishedAt":"2026-02-08T03:59:51.889536Z","updatedAt":"2026-02-08T03:59:51.889536Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.0.18","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.0.18","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-02-16T00:39:54.678732Z","publishedAt":"2026-02-16T00:39:54.678732Z","updatedAt":"2026-02-16T00:39:54.678732Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.0.19","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.0.19","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-02-19T06:51:23.236314Z","publishedAt":"2026-02-19T06:51:23.236314Z","updatedAt":"2026-02-19T06:51:23.236314Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.0.19.1","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.0.19.1","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-02-19T15:53:20.77811Z","publishedAt":"2026-02-19T15:53:20.77811Z","updatedAt":"2026-02-19T15:53:20.77811Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.0.20","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.0.20","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-02-22T23:36:44.967564Z","publishedAt":"2026-02-22T23:36:44.967564Z","updatedAt":"2026-02-22T23:36:44.967564Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.0.21","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.0.21","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-02-25T22:02:02.887519Z","publishedAt":"2026-02-25T22:02:02.887519Z","updatedAt":"2026-02-25T22:02:02.887519Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.0.22","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.0.22","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-02-26T18:59:21.795128Z","publishedAt":"2026-02-26T18:59:21.795128Z","updatedAt":"2026-02-26T18:59:21.795128Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.1.1","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.1.1","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-03-05T21:25:38.598919Z","publishedAt":"2026-03-05T21:25:38.598919Z","updatedAt":"2026-03-05T21:25:38.598919Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.1.10","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.1.10","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-03-27T00:43:11.609566Z","publishedAt":"2026-03-27T00:43:11.609566Z","updatedAt":"2026-03-27T00:43:11.609566Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.1.11","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.1.11","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-03-29T22:42:40.285445Z","publishedAt":"2026-03-29T22:42:40.285445Z","updatedAt":"2026-03-29T22:42:40.285445Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.1.2","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.1.2","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-03-06T16:27:15.960869Z","publishedAt":"2026-03-06T16:27:15.960869Z","updatedAt":"2026-03-06T16:27:15.960869Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.1.3","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.1.3","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-03-09T14:59:45.396565Z","publishedAt":"2026-03-09T14:59:45.396565Z","updatedAt":"2026-03-09T14:59:45.396565Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.1.4","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.1.4","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-03-14T03:47:35.291721Z","publishedAt":"2026-03-14T03:47:35.291721Z","updatedAt":"2026-03-14T03:47:35.291721Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.1.7","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.1.7","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-03-25T05:29:42.36261Z","publishedAt":"2026-03-25T05:29:42.36261Z","updatedAt":"2026-03-25T05:29:42.36261Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.1.8","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.1.8","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-03-25T19:19:03.714013Z","publishedAt":"2026-03-25T19:19:03.714013Z","updatedAt":"2026-03-25T19:19:03.714013Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.1.9","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.1.9","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-03-26T02:02:47.30305Z","publishedAt":"2026-03-26T02:02:47.30305Z","updatedAt":"2026-03-26T02:02:47.30305Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.2.1","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.2.1","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-05-22T16:10:36.345743Z","publishedAt":"2026-05-22T16:10:36.345743Z","updatedAt":"2026-05-22T16:10:36.345743Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.2.2","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.2.2","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-05-26T22:41:56.148311Z","publishedAt":"2026-05-26T22:41:56.148311Z","updatedAt":"2026-05-26T22:41:56.148311Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.2.3","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.2.3","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-06-02T03:24:55.773163Z","publishedAt":"2026-06-02T03:24:55.773163Z","updatedAt":"2026-06-02T03:24:55.773163Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.2.4","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.2.4","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-06-03T22:33:19.217526Z","publishedAt":"2026-06-03T22:33:19.217526Z","updatedAt":"2026-06-03T22:33:19.217526Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.2.6","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.2.6","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-06-06T23:46:29.636079Z","publishedAt":"2026-06-06T23:46:29.636079Z","updatedAt":"2026-06-06T23:46:29.636079Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.3.0","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.3.0","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-06-14T23:06:02.92602Z","publishedAt":"2026-06-14T23:06:02.92602Z","updatedAt":"2026-06-14T23:06:02.92602Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"1000+ scientific tools for AI scientists: life science, reserach, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.3.1","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.3.1","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 1000+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-07-02T02:16:20.862157Z","publishedAt":"2026-07-02T02:16:20.862157Z","updatedAt":"2026-07-02T02:16:20.862157Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"2,500+ scientific tools for AI scientists: life science, research, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.4.0","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.4.0","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 2,500+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-07-24T10:48:55.139603Z","publishedAt":"2026-07-24T10:48:55.139603Z","updatedAt":"2026-07-24T10:48:55.139603Z","isLatest":false}}},{"server":{"$schema":"https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json","name":"io.github.mims-harvard/tooluniverse","description":"2,500+ scientific tools for AI scientists: life science, research, literature, and more.","repository":{"url":"https://github.com/mims-harvard/ToolUniverse","source":"github"},"version":"1.4.1","websiteUrl":"https://aiscientist.tools","packages":[{"registryType":"pypi","registryBaseUrl":"https://pypi.org","identifier":"tooluniverse","version":"1.4.1","runtimeHint":"uvx","transport":{"type":"stdio"},"packageArguments":[{"value":"tooluniverse-smcp-stdio","type":"positional"},{"description":"Compact mode enabled by default: only exposes 4 core tools (tool finder, tool executor, etc.) to prevent context window overflow. All 2,500+ tools remain accessible via the execute_tool function.","value":"--compact-mode","type":"positional"},{"description":"Specific tool categories to load (e.g., uniprot ChEMBL opentarget pubmed). Omit to load all tools. See full list: https://zitniklab.hms.harvard.edu/ToolUniverse/tools/tools_config_index.html","type":"named","name":"--categories","valueHint":"CATEGORY","isRepeated":true}],"environmentVariables":[{"description":"OpenAI API key for LLM-based tool finding and embedding features","isSecret":true,"name":"OPENAI_API_KEY"},{"description":"Anthropic API key for Claude-based features","isSecret":true,"name":"ANTHROPIC_API_KEY"},{"description":"Google Gemini API key for Gemini-based features","isSecret":true,"name":"GEMINI_API_KEY"},{"description":"OpenRouter API key for accessing 100+ LLM models","isSecret":true,"name":"OPENROUTER_API_KEY"},{"description":"Azure OpenAI API key (alternative to OpenAI)","isSecret":true,"name":"AZURE_OPENAI_API_KEY"},{"description":"HuggingFace token for accessing models and datasets","isSecret":true,"name":"HF_TOKEN"},{"description":"NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/","isSecret":true,"name":"NCBI_API_KEY"},{"description":"Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api","isSecret":true,"name":"SEMANTIC_SCHOLAR_API_KEY"},{"description":"BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/","isSecret":true,"name":"BIOGRID_API_KEY"},{"description":"DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/","isSecret":true,"name":"DISGENET_API_KEY"},{"description":"OMIM API key for Mendelian disease data. Register at https://omim.org/api","isSecret":true,"name":"OMIM_API_KEY"},{"description":"OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess","isSecret":true,"name":"ONCOKB_API_TOKEN"},{"description":"NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com","isSecret":true,"name":"NVIDIA_API_KEY"},{"description":"USPTO API key for patent data access. Register at https://developer.uspto.gov/","isSecret":true,"name":"USPTO_API_KEY"},{"description":"UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/","isSecret":true,"name":"UMLS_API_KEY"},{"description":"BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/","name":"BRENDA_EMAIL"},{"description":"BRENDA enzyme database login password","isSecret":true,"name":"BRENDA_PASSWORD"}]}],"_meta":{}},"_meta":{"io.modelcontextprotocol.registry/official":{"status":"active","statusChangedAt":"2026-08-12T15:26:49.876362Z","publishedAt":"2026-08-12T15:26:49.876362Z","updatedAt":"2026-08-12T15:26:49.876362Z","isLatest":true}}}],"metadata":{"nextCursor":"io.github.mims-harvard/tooluniverse:1.4.1","count":30}}
